Traefik won't update certs

Thank you for the response!

I have attempted to recreate it without any secrets (info directly into the ymls) and previous to that I made sure that I gave the entire secrets folder chmod 777.

Edit: Also I've tried working using the staging server for cf (to avoid rate limitation) but it's still complaining about same error:

acme.json

{
  "cloudflare": {
    "Account": {
      "Email": "Redacted",
      "Registration": {
        "body": {
          "status": "valid",
          "contact": [
            "mailto:Redacted"
          ]
        },
        "uri": "https://acme-v02.api.letsencrypt.org/acme/acct/81031964"
      },
      "PrivateKey": "Redacted",
      "KeyType": "4096"
    },
    "Certificates": null
  }
}

traefik.log

time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"www.REDACTED.se\"] need ACME certificates generation for domains \"www.REDACTED.se\"." providerName=cloudflare.acme routerName=www rule="Host(`www.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [plex.REDACTED.se] founded in HostSNI rule" rule="Host(`plex.REDACTED.se`)" providerName=cloudflare.acme routerName=plex
time="2020-03-19T19:21:34+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"whoami.REDACTED.se\"]..." routerName=whoami rule="Host(`whoami.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [lidarr.REDACTED.se] founded in HostSNI rule" routerName=lidarr rule="Host(`lidarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"jackett.REDACTED.se\"] need ACME certificates generation for domains \"jackett.REDACTED.se\"." rule="Host(`jackett.REDACTED.se`)" providerName=cloudflare.acme routerName=jackett
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [nzbget.REDACTED.se] founded in HostSNI rule" rule="Host(`nzbget.REDACTED.se`)" providerName=cloudflare.acme routerName=nzbget
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [oscarr.REDACTED.se] founded in HostSNI rule" rule="Host(`oscarr.REDACTED.se`)" providerName=cloudflare.acme routerName=oscarr
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"whoami.REDACTED.se\"] need ACME certificates generation for domains \"whoami.REDACTED.se\"." rule="Host(`whoami.REDACTED.se`)" providerName=cloudflare.acme routerName=whoami
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [sonarr.REDACTED.se] founded in HostSNI rule" providerName=cloudflare.acme routerName=sonarr rule="Host(`sonarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [headphones.REDACTED.se] founded in HostSNI rule" rule="Host(`headphones.REDACTED.se`)" providerName=cloudflare.acme routerName=headphones
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [heimdall.REDACTED.se] founded in HostSNI rule" rule="Host(`heimdall.REDACTED.se`)" providerName=cloudflare.acme routerName=heimdall
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [portainer.REDACTED.se] founded in HostSNI rule" routerName=portainer rule="Host(`portainer.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Try to challenge certificate for domain [auth.REDACTED.se] founded in HostSNI rule" providerName=cloudflare.acme routerName=auth rule="Host(`auth.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"bazarr.REDACTED.se\"]..." providerName=cloudflare.acme routerName=bazarr rule="Host(`bazarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"bazarr.REDACTED.se\"] need ACME certificates generation for domains \"bazarr.REDACTED.se\"." routerName=bazarr rule="Host(`bazarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [ombi.REDACTED.se]..." providerName=cloudflare.acme routerName=ombi rule="Host(`ombi.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"headphones.REDACTED.se\"]..." providerName=cloudflare.acme routerName=headphones rule="Host(`headphones.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"headphones.REDACTED.se\"] need ACME certificates generation for domains \"headphones.REDACTED.se\"." routerName=headphones rule="Host(`headphones.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"lidarr.REDACTED.se\"]..." providerName=cloudflare.acme routerName=lidarr rule="Host(`lidarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"heimdall.REDACTED.se\"]..." routerName=heimdall rule="Host(`heimdall.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"lidarr.REDACTED.se\"] need ACME certificates generation for domains \"lidarr.REDACTED.se\"." routerName=lidarr rule="Host(`lidarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"nzbget.REDACTED.se\"]..." rule="Host(`nzbget.REDACTED.se`)" providerName=cloudflare.acme routerName=nzbget
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"heimdall.REDACTED.se\"] need ACME certificates generation for domains \"heimdall.REDACTED.se\"." providerName=cloudflare.acme routerName=heimdall rule="Host(`heimdall.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"portainer.REDACTED.se\"]..." rule="Host(`portainer.REDACTED.se`)" providerName=cloudflare.acme routerName=portainer
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"nzbget.REDACTED.se\"] need ACME certificates generation for domains \"nzbget.REDACTED.se\"." routerName=nzbget rule="Host(`nzbget.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"oscarr.REDACTED.se\"]..." routerName=oscarr rule="Host(`oscarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"portainer.REDACTED.se\"] need ACME certificates generation for domains \"portainer.REDACTED.se\"." routerName=portainer rule="Host(`portainer.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"nzbhydra.REDACTED.se\"]..." rule="Host(`nzbhydra.REDACTED.se`)" providerName=cloudflare.acme routerName=hydra2
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"oscarr.REDACTED.se\"] need ACME certificates generation for domains \"oscarr.REDACTED.se\"." routerName=oscarr rule="Host(`oscarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"nzbhydra.REDACTED.se\"] need ACME certificates generation for domains \"nzbhydra.REDACTED.se\"." providerName=cloudflare.acme routerName=hydra2 rule="Host(`nzbhydra.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [www.REDACTED.se]..." providerName=cloudflare.acme routerName=www rule="Host(`www.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"sonarr.REDACTED.se\"]..." routerName=sonarr rule="Host(`sonarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"auth.REDACTED.se\"]..." routerName=auth rule="Host(`auth.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"sonarr.REDACTED.se\"] need ACME certificates generation for domains \"sonarr.REDACTED.se\"." providerName=cloudflare.acme routerName=sonarr rule="Host(`sonarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"auth.REDACTED.se\"] need ACME certificates generation for domains \"auth.REDACTED.se\"." providerName=cloudflare.acme routerName=auth rule="Host(`auth.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Looking for provided certificate(s) to validate [\"plex.REDACTED.se\"]..." providerName=cloudflare.acme routerName=plex rule="Host(`plex.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Domains [\"plex.REDACTED.se\"] need ACME certificates generation for domains \"plex.REDACTED.se\"." providerName=cloudflare.acme routerName=plex rule="Host(`plex.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [jackett.REDACTED.se]..." routerName=jackett rule="Host(`jackett.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [whoami.REDACTED.se]..." providerName=cloudflare.acme routerName=whoami rule="Host(`whoami.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [bazarr.REDACTED.se]..." providerName=cloudflare.acme routerName=bazarr rule="Host(`bazarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [headphones.REDACTED.se]..." providerName=cloudflare.acme routerName=headphones rule="Host(`headphones.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [lidarr.REDACTED.se]..." providerName=cloudflare.acme routerName=lidarr rule="Host(`lidarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [heimdall.REDACTED.se]..." routerName=heimdall rule="Host(`heimdall.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [nzbget.REDACTED.se]..." rule="Host(`nzbget.REDACTED.se`)" providerName=cloudflare.acme routerName=nzbget
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [portainer.REDACTED.se]..." providerName=cloudflare.acme routerName=portainer rule="Host(`portainer.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [oscarr.REDACTED.se]..." providerName=cloudflare.acme routerName=oscarr rule="Host(`oscarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [nzbhydra.REDACTED.se]..." providerName=cloudflare.acme routerName=hydra2 rule="Host(`nzbhydra.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [sonarr.REDACTED.se]..." providerName=cloudflare.acme routerName=sonarr rule="Host(`sonarr.REDACTED.se`)"
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [auth.REDACTED.se]..." rule="Host(`auth.REDACTED.se`)" providerName=cloudflare.acme routerName=auth
time="2020-03-19T19:21:34+01:00" level=debug msg="Loading ACME certificates [plex.REDACTED.se]..." rule="Host(`plex.REDACTED.se`)" providerName=cloudflare.acme routerName=plex
time="2020-03-19T19:21:35+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:35+01:00" level=error msg="Unable to obtain ACME certificate for domains \"nowshowing.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" rule="Host(`nowshowing.REDACTED.se`)" providerName=cloudflare.acme routerName=nowshowing
time="2020-03-19T19:21:35+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:35+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=error msg="Unable to obtain ACME certificate for domains \"ombi.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" routerName=ombi rule="Host(`ombi.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=error msg="Unable to obtain ACME certificate for domains \"www.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" rule="Host(`www.REDACTED.se`)" providerName=cloudflare.acme routerName=www
time="2020-03-19T19:21:36+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:36+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:37+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:37+01:00" level=error msg="Unable to obtain ACME certificate for domains \"jackett.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" providerName=cloudflare.acme routerName=jackett rule="Host(`jackett.REDACTED.se`)"
time="2020-03-19T19:21:37+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:37+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:37+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:37+01:00" level=error msg="Unable to obtain ACME certificate for domains \"whoami.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" rule="Host(`whoami.REDACTED.se`)" providerName=cloudflare.acme routerName=whoami
time="2020-03-19T19:21:37+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:37+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:38+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:38+01:00" level=error msg="Unable to obtain ACME certificate for domains \"bazarr.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" providerName=cloudflare.acme routerName=bazarr rule="Host(`bazarr.REDACTED.se`)"
time="2020-03-19T19:21:38+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:38+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=error msg="Unable to obtain ACME certificate for domains \"headphones.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" providerName=cloudflare.acme routerName=headphones rule="Host(`headphones.REDACTED.se`)"
time="2020-03-19T19:21:39+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=error msg="Unable to obtain ACME certificate for domains \"lidarr.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" routerName=lidarr rule="Host(`lidarr.REDACTED.se`)" providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:39+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:40+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:40+01:00" level=error msg="Unable to obtain ACME certificate for domains \"heimdall.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" providerName=cloudflare.acme routerName=heimdall rule="Host(`heimdall.REDACTED.se`)"
time="2020-03-19T19:21:40+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:40+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:40+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:40+01:00" level=error msg="Unable to obtain ACME certificate for domains \"nzbget.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" providerName=cloudflare.acme routerName=nzbget rule="Host(`nzbget.REDACTED.se`)"
time="2020-03-19T19:21:40+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:40+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:41+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:41+01:00" level=error msg="Unable to obtain ACME certificate for domains \"portainer.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" providerName=cloudflare.acme routerName=portainer rule="Host(`portainer.REDACTED.se`)"
time="2020-03-19T19:21:41+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:41+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme
time="2020-03-19T19:21:42+01:00" level=debug msg="Using DNS Challenge provider: cloudflare" providerName=cloudflare.acme
time="2020-03-19T19:21:42+01:00" level=error msg="Unable to obtain ACME certificate for domains \"oscarr.REDACTED.se\": cannot get ACME client cloudflare: some credentials information are missing: CLOUDFLARE_EMAIL,CLOUDFLARE_API_KEY" rule="Host(`oscarr.REDACTED.se`)" providerName=cloudflare.acme routerName=oscarr
time="2020-03-19T19:21:42+01:00" level=debug msg="Building ACME client..." providerName=cloudflare.acme
time="2020-03-19T19:21:42+01:00" level=debug msg="https://acme-staging-v02.api.letsencrypt.org/directory" providerName=cloudflare.acme

The error SHOULD be due to my manual configuration being off but I have tried every combination possible as described Here